RnoEX0053766 @ rn6
Exon Skipping
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52346699-52351266:+
Coord C1 exon
chr18:52346699-52346827
Coord A exon
chr18:52349017-52349145
Coord C2 exon
chr18:52351138-52351266
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCCGACCTTACACAGGAT
3' ss Score
7.11
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CCTGTCCACCAGCCCACTGGGGTCCGAACTGCATCCATACATGCAACTGCCACAATGGAGCCTTTTGCAGCGCCTATGATGGGGAATGCAAATGCACTCCTGGCTGGACGGGGCTCTACTGCACTCAGA
Seq A exon
GATGCCCTCTGGGCTTCTATGGCAAGGACTGTGCACTGGTATGCCAATGTCAAAACGGAGCTGACTGCGACCACATCTCGGGGCAGTGTACCTGCCGCACGGGATTCATGGGACGGCACTGTGAACAGA
Seq C2 exon
AATGCCCTGCGGGAACATACGGCTATGGCTGTCGCCAGATCTGCGACTGTCTGAACAACTCCACCTGTGACCACATCACCGGCACGTGTTACTGTAGCCCAGGGTGGAAAGGAGCACGATGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674-'23-20,'23-19,24-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF0005319=Laminin_EGF=PU(82.5=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGGTCCGAACTGCATC
R:
CTTGGTCACATCGTGCTCCTT
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]