GgaEX1035856 @ galGal3
Exon Skipping
Gene
ENSGALG00000014699 | MEGF10
Description
NA
Coordinates
chrZ:55306191-55309982:+
Coord C1 exon
chrZ:55306191-55306319
Coord A exon
chrZ:55307707-55307835
Coord C2 exon
chrZ:55309854-55309982
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTCCTGGTATTGCAGGAT
3' ss Score
8.51
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CATGCCCACCTTCTCACTGGGGACCAAACTGCATCCACACATGCAACTGCCATAATGGAGCTTACTGCAGTGCCTACGATGGAGAGTGCAAATGTACCCCAGGATGGACTGGCCTTTACTGTACGCAAC
Seq A exon
GATGTCCCCTTGGATTTTATGGGAAGGACTGTGCACTGATATGCCAATGCAGGAATGGAGCCGATTGTGACCACATCAGTGGGCAGTGTACCTGCCGCACAGGATTCATGGGGAAGCACTGTGAGCAGA
Seq C2 exon
AATGCCCTCAAGGTACATATGGGTATGGATGTCGGCAGATATGTGACTGTCTGAACAACTCAACCTGTGACCACATCACAGGAACGTGTTACTGCAGCCCAGGCTGGAAGGGGGCCAGGTGTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF0005319=Laminin_EGF=PU(78.4=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCCACCTTCTCACTGG
R:
GATCACACCTGGCCCCCTTC
Band lengths:
255-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]