MmuEX6001638 @ mm10
Exon Skipping
Gene
ENSMUSG00000024593 | Megf10
Description
multiple EGF-like-domains 10 [Source:MGI Symbol;Acc:MGI:2685177]
Coordinates
chr18:57281624-57285936:+
Coord C1 exon
chr18:57281624-57281752
Coord A exon
chr18:57283794-57283922
Coord C2 exon
chr18:57285808-57285936
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCCATTCTTACACAGGAT
3' ss Score
8.9
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CCTGTCCACCTGCGCACTGGGGTCCGAACTGCATCCACACCTGCAACTGCCACAACGGAGCCTTTTGCAGCGCCTATGATGGGGAATGCAAATGCACTCCTGGCTGGACGGGGCTCTACTGCACTCAGA
Seq A exon
GATGCCCTCTGGGCTTCTATGGTAAGGACTGTGCACTGATATGCCAATGTCAAAACGGAGCTGACTGCGACCATATCTCGGGGCAGTGTACCTGCCGCACGGGATTCATGGGACGGCACTGTGAACAGA
Seq C2 exon
AGTGCCCTGCGGGAACATACGGCTATGGCTGTCGCCAGATCTGTGACTGTCTGAACAACTCCACCTGTGACCACATCACTGGCACGTGTTACTGTAGCCCAGGATGGAAAGGGGCACGATGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024593-'24-24,'24-23,26-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF0005319=Laminin_EGF=PU(82.5=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCACCTGCGCACTG
R:
CACATCGTGCCCCTTTCCATC
Band lengths:
251-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types