Special

MmuEX6071816 @ mm10

Exon Skipping

Gene
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87752472-87753894:-
Coord C1 exon
chr3:87753766-87753894
Coord A exon
chr3:87752708-87752836
Coord C2 exon
chr3:87752472-87752600
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAGCCCCTTGTCTCCTGTAGCAT
3' ss Score
7.44
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
CCTGCCCGCCTGGTCGCTATGGCAAACGCTGTGTGCAATGCAAGTGTAACAACAACCATTCTTCCTGCCACCCATCGGACGGGACCTGCTCCTGCCTGGCGGGCTGGACAGGCCCTGACTGCTCCGAGG
Seq A exon
CATGTCCCCCAGGCCACTGGGGACTCAAATGCTCCCAACTCTGCCAGTGTCATCATGGTGGGACCTGCCACCCCCAGGATGGGAGCTGTATCTGCACGCCAGGCTGGACTGGACCCAACTGCTTGGAAG
Seq C2 exon
GCTGCCCACCAAGAATGTTTGGTGTCAACTGCTCCCAGCTATGTCAGTGTGATCTCGGAGAGATGTGCCACCCAGAGACTGGGGCTTGTGTCTGTCCCCCAGGACACAGTGGTGCAGACTGCAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-'42-48,'42-44,44-48
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0005319=Laminin_EGF=PU(69.8=68.2)
A:
PF0005319=Laminin_EGF=PD(27.9=27.3),PF126612=hEGF=WD(100=29.5)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCGCTATGGCAAACG
R:
CAGTCTGCACCACTGTGTCC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types