MmuEX6071816 @ mm10
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87752472-87753894:-
Coord C1 exon
chr3:87753766-87753894
Coord A exon
chr3:87752708-87752836
Coord C2 exon
chr3:87752472-87752600
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAGCCCCTTGTCTCCTGTAGCAT
3' ss Score
7.44
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
CCTGCCCGCCTGGTCGCTATGGCAAACGCTGTGTGCAATGCAAGTGTAACAACAACCATTCTTCCTGCCACCCATCGGACGGGACCTGCTCCTGCCTGGCGGGCTGGACAGGCCCTGACTGCTCCGAGG
Seq A exon
CATGTCCCCCAGGCCACTGGGGACTCAAATGCTCCCAACTCTGCCAGTGTCATCATGGTGGGACCTGCCACCCCCAGGATGGGAGCTGTATCTGCACGCCAGGCTGGACTGGACCCAACTGCTTGGAAG
Seq C2 exon
GCTGCCCACCAAGAATGTTTGGTGTCAACTGCTCCCAGCTATGTCAGTGTGATCTCGGAGAGATGTGCCACCCAGAGACTGGGGCTTGTGTCTGTCCCCCAGGACACAGTGGTGCAGACTGCAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-'42-48,'42-44,44-48
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(69.8=68.2)
A:
PF0005319=Laminin_EGF=PD(27.9=27.3),PF126612=hEGF=WD(100=29.5)
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCGCTATGGCAAACG
R:
CAGTCTGCACCACTGTGTCC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types