DreEX6087553 @ danRer10
Exon Skipping
Gene
ENSDARG00000017229 | megf10
Description
multiple EGF-like-domains 10 [Source:ZFIN;Acc:ZDB-GENE-080506-1]
Coordinates
chr10:16184240-16188935:+
Coord C1 exon
chr10:16184240-16184368
Coord A exon
chr10:16188567-16188695
Coord C2 exon
chr10:16188807-16188935
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTATTTGTGCTTACCCATAGCAT
3' ss Score
8.9
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGTGTCCCAGTGGCAAGTTTGGCAAGAACTGTGGAGGGAGCTGCACCTGCACTAATAATGGCACTTGTAGCCCCATGGACGGCTCATGTCAGTGCTATCCCGGCTGGATTGGCAGTGACTGCTCACAGC
Seq A exon
CATGTCCTCCGGGTCAGTGGGGTCCCAACTGCATTCACACTTGCAACTGTCACAATGGAGCATTCTGCAGTGCTTATGACGGCGAGTGTAAATGTACGGCCGGCTGGACAGGTCTCTACTGCACACAAA
Seq C2 exon
GATGTCCATTGGGTTTCTATGGTAAGGATTGTGTGCAGGCATGTCAATGTGAGAATGGTGCAGACTGCAATCACATCTCGGGTCAGTGCACATGCCGTACAGGCTTCATGGGACGTCACTGTGAAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017229-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(69.0=65.9)
A:
PF0005319=Laminin_EGF=PD(28.6=27.3)
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCCCAGTGGCAAGTTTG
R:
CGTTTCACAGTGACGTCCCAT
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]