GgaEX6050646 @ galGal3
Exon Skipping
Gene
ENSGALG00000014699 | MEGF10
Description
NA
Coordinates
chrZ:55304450-55307835:+
Coord C1 exon
chrZ:55304450-55304578
Coord A exon
chrZ:55306191-55306319
Coord C2 exon
chrZ:55307707-55307835
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTGCTCTGTGTTTTTTCAGCAT
3' ss Score
10.58
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TATGTCCCAGTGGCAGATTTGGCAAGAACTGCATTGGAATATGCACCTGCACCAATAATGGAACATGCAATCCTATCGACAGATCCTGTCAGTGTTATCCTGGGTGGATTGGTAGTGACTGCTCTCAGC
Seq A exon
CATGCCCACCTTCTCACTGGGGACCAAACTGCATCCACACATGCAACTGCCATAATGGAGCTTACTGCAGTGCCTACGATGGAGAGTGCAAATGTACCCCAGGATGGACTGGCCTTTACTGTACGCAAC
Seq C2 exon
GATGTCCCCTTGGATTTTATGGGAAGGACTGTGCACTGATATGCCAATGCAGGAATGGAGCCGATTGTGACCACATCAGTGGGCAGTGTACCTGCCGCACAGGATTCATGGGGAAGCACTGTGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=61.4)
A:
NO
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCCAGTGGCAGATTTGG
R:
CTTCCCCATGAATCCTGTGCG
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]