BtaEX0021914 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000329 | MEGF10
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27840363-27844680:-
Coord C1 exon
chr7:27844552-27844680
Coord A exon
chr7:27842979-27843107
Coord C2 exon
chr7:27840363-27840491
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACGCTGTGCTGTGCTTTCAGCTT
3' ss Score
8.04
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
TGTGTCCCAGTGGCAGATTTGGGAAAAACTGTGCAGGAATTTGTACCTGTACCAACAATGGAACCTGTAACCCCATTGACCGATCCTGTCAGTGTTACCCAGGGTGGATCGGCAGTGACTGCTCTCAAC
Seq A exon
CTTGTCCCCCTGCGCACTGGGGCCCGAACTGCATCCATACATGCAACTGCCACAACGGGGCCTTCTGCAGCGCCTACGACGGGGAATGCAAATGCACTCCGGGCTGGACGGGGCTCTACTGCACTCAGA
Seq C2 exon
GATGTCCCCTGGGCTTCTATGGAAAGGACTGTGCGTTGGTATGCCAGTGTCAAAACGGAGCCGACTGCGACCACATCTCCGGGCAGTGTACTTGCCGCACTGGCTTCATGGGGAAGCATTGCGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329-'20-17,'20-16,21-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=63.6)
A:
NO
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGGCAGATTTGGGAAA
R:
TTCGCAATGCTTCCCCATGAA
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development