MmuEX6001639 @ mm9
Exon Skipping
Gene
ENSMUSG00000024593 | Megf10
Description
multiple EGF-like-domains 10 [Source:MGI Symbol;Acc:MGI:2685177]
Coordinates
chr18:57437250-57443576:+
Coord C1 exon
chr18:57437250-57437378
Coord A exon
chr18:57441278-57441406
Coord C2 exon
chr18:57443448-57443576
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACACTTGCTGTGCTTTCAGCCT
3' ss Score
6.32
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
TGTGTCCCAGTGGCAGATTTGGGAAAAACTGTGCAGGCGTTTGTACTTGCACCAACAATGGCACCTGTAACCCCATCGACAGATCCTGCCAGTGTTACCCAGGCTGGATTGGCAGTGACTGCTCCCAGC
Seq A exon
CCTGTCCACCTGCGCACTGGGGTCCGAACTGCATCCACACCTGCAACTGCCACAACGGAGCCTTTTGCAGCGCCTATGATGGGGAATGCAAATGCACTCCTGGCTGGACGGGGCTCTACTGCACTCAGA
Seq C2 exon
GATGCCCTCTGGGCTTCTATGGTAAGGACTGTGCACTGATATGCCAATGTCAAAACGGAGCTGACTGCGACCATATCTCGGGGCAGTGTACCTGCCGCACGGGATTCATGGGACGGCACTGTGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024593-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=65.9)
A:
NO
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGGCAGATTTGGGAAA
R:
CACAGTGCCGTCCCATGAATC
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: