MmuEX6001639 @ mm10
Exon Skipping
Gene
ENSMUSG00000024593 | Megf10
Description
multiple EGF-like-domains 10 [Source:MGI Symbol;Acc:MGI:2685177]
Coordinates
chr18:57277596-57283922:+
Coord C1 exon
chr18:57277596-57277724
Coord A exon
chr18:57281624-57281752
Coord C2 exon
chr18:57283794-57283922
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACACTTGCTGTGCTTTCAGCCT
3' ss Score
6.32
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
TGTGTCCCAGTGGCAGATTTGGGAAAAACTGTGCAGGCGTTTGTACTTGCACCAACAATGGCACCTGTAACCCCATCGACAGATCCTGCCAGTGTTACCCAGGCTGGATTGGCAGTGACTGCTCCCAGC
Seq A exon
CCTGTCCACCTGCGCACTGGGGTCCGAACTGCATCCACACCTGCAACTGCCACAACGGAGCCTTTTGCAGCGCCTATGATGGGGAATGCAAATGCACTCCTGGCTGGACGGGGCTCTACTGCACTCAGA
Seq C2 exon
GATGCCCTCTGGGCTTCTATGGTAAGGACTGTGCACTGATATGCCAATGTCAAAACGGAGCTGACTGCGACCATATCTCGGGGCAGTGTACCTGCCGCACGGGATTCATGGGACGGCACTGTGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024593-'23-23,'23-22,24-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGGCAGATTTGGGAAA
R:
CACAGTGCCGTCCCATGAATC
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types