GgaEX6050646 @ galGal4
Exon Skipping
Gene
ENSGALG00000014699 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chrZ:56257590-56260975:+
Coord C1 exon
chrZ:56257590-56257718
Coord A exon
chrZ:56259331-56259459
Coord C2 exon
chrZ:56260847-56260975
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTGCTCTGTGTTTTTTCAGCAT
3' ss Score
10.58
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TATGTCCCAGTGGCAGATTTGGCAAGAACTGCATTGGAATATGCACCTGCACCAATAATGGAACATGCAATCCTATCGACAGATCCTGTCAGTGTTATCCTGGGTGGATTGGTAGTGACTGCTCTCAGC
Seq A exon
CATGCCCACCTTCTCACTGGGGACCAAACTGCATCCACACATGCAACTGCCATAATGGAGCTTACTGCAGTGCCTACGATGGAGAGTGCAAATGTACCCCAGGATGGACTGGCCTTTACTGTACGCAAC
Seq C2 exon
GATGTCCCCTTGGATTTTATGGGAAGGACTGTGCACTGATATGCCAATGCAGGAATGGAGCCGATTGTGACCACATCAGTGGGCAGTGTACCTGCCGCACAGGATTCATGGGGAAGCACTGTGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=61.4)
A:
NO
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCCAGTGGCAGATTTGG
R:
CTTCCCCATGAATCCTGTGCG
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]