GgaEX1047845 @ galGal4
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
rab GTPase-activating protein 1-like [Source:RefSeq peptide;Acc:NP_001012941]
Coordinates
chr8:7099196-7106427:-
Coord C1 exon
chr8:7106335-7106427
Coord A exon
chr8:7102080-7106055
Coord C2 exon
chr8:7099196-7099306
Length
3976 bp
Sequences
Splice sites
3' ss Seq
TAATATTTTTCTTCTTTCAGTTT
3' ss Score
9.43
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGCCAACAAAAAAACTGAAGAAATATGAGAGAGAGTACCAAACAATGCGAGAGAGTCAGCTGCAGCAGGAAGATCCTATGGACAGATACAAG
Seq A exon
TTTATATGTTTGTAGGTAACTCTCCTGCTGTTGCACTTTTACGGGAGATCTTCATGAGATGCAGAAACAAAGGGTGATTCTCAGCTACAGACACAGAAAGGAGAAAATACACATTGTTCTAGCCCAAGCTGTGTGCAGTAACATCCACAGAGACTTCGGGAAGATGCATTCTTCCTTGACTTGATATGTCCTTGTTTCTCAACTCTGTTTATAGCAAATGTTAGTAATTTTTTGTCAGTGTAATGACTAGTACAGTGGGACCCAGTGTTCTCTTGGGGTCCTGGCATACTACTGCAATAGGATTAATAGTCATAAGTAGCATGCTTTAGAGCAGCAGAAGAATAAAGCTTCAGTTATTAATATGGTAGCTCAATAGTTTACAAAAATATAGTCCTTGATAATTTTGGATCAGCGTTGTTTCCAATATGTTTGTTTTATTGTTACTGCTACGTTCTGTTGCCATAGGTTTTTGTGTGATGGAGGCTCTGCCTCTAGGTTTATATTTTACACAGTGTTCAGGATTCTTTTCTTGCTTACCCAGTATTAAAAAGAGGTTAGTGTTCCTTGGGAAAAGCTGCCAAAGATGAAGCACTTTACTGCATATTGCCCAGTTTTGCTGGGAACTGACATTGCTTTTATACATCTGTGTTGTTTTCCTGCCGTTCTTCATTGTGCCTTATTATGTGTTGATACGGAGTCTGCCCGGAGTGTGGGCTAGTGAATAATTACAGGTGCTGCCACAGGTTTACATGGCATGTAAGCATAAGGAAAGTGCACCGTGTTCGTAAAACCACAGTGTGAAAGACTGTGCTGTAATCCATAAATACGATGAGATAGAGTTACACTTACAAAGAAAGTAAAACTGACTTTAAAAAAAATACTTGCTTCTGAAAAATAATGTTTTAAGTGTAGTTCTTTTATGTCAAAGAGTGAATTGAGAACTGAGAACTGGGGCTGCCAAGAGCTGCTGATGATAAGAACATTGAGAAAAAAACACAACTTGCTGCTGATGAACTTCTTTTCCAGTGATTTGCTTATACTACTGTGGAATTAAAGTGATACTTAAAAGCCAAAGAAGGCTTCTTTAAAGCTCTGTGGAAACTGGTTAATCCTGGGTGATGGACGGTGAAGAACATCATCTCCAAACTGCAAATGAGGATATAGAAAGTGGCTCTGTGGTCACTGCCTATGTGAGTCACTGTCATGGCCAAGAGCACAGCACAGGTGTTGGCTTGCACTTGCCCAGCTGCCTGTGTTGGGTCTGCTCTTCTTACAGATGATGTGCTTAGGTAGGCTCCATAACTTGTTGGCTGCACATTAAATGCAAAGTTCAGAGTTATTCTTCAGCTGATCGATGTGATGGAGAAATGCTTGTCAGTGCTGTCTGTCCCTTGTCTTGCTTGTTTGATTTTTTATTTGCGTATCAGGCTGAGGTTGGTGAGAATTGACATTTCAAGAGAGTTTCCAAAGGGCAAGGGGAAATGCAAGCTGTGGACCCTTGTGGACAGAAAGTGGAGAGCCAGCTTTGCTTATCCCTTAAGTGATCACAGAGCAGCCCTTGTGTTTTGAAATGCATTTGGGTTTGGCAGTGCCTGGCTGGGCTTGGTTAGGGAAACACCTGAGACAACGCTGCTGAAAAGACAACATATTGCCTGAGTACAGCCTTGCTGCTAGTTCCTCTGGCCTGTGTGGGCTCTACCCTAGAGGTCCACTTTGTAATCTTCCAGAACAGCATGTTGCTTTGGTTTACTTACCTAGGAAGAGGGGACTGCTTGGGCTCATGGGTGCCACTTAGAATATTCCTCTTAGAGGTTGAGAAGGACACAGGCCTGCAGTCTCTTGGCAGTTTTTAGTTAGAATTGTTACAGTTTTTGCTGTTTGCAGCATGTGTTGAGGTTTTTGTTGCCAACAGAGATTTGTCAGGACCAATGGGATGTGCTCAGTGATGGTGTTGCATTGGCGCTCCTGACTTGCAGGGATGAAGGATGTGTTGAGTAAGACCCCTCCCTGTGAGCAGGATGGTGCTGGGGAGTGGATGGGAGCAGCACCCCTTTGATGGCAGCAGGGCTTCAGCCAAGCTGCAGTCTCTTCCTGCTGTCCCCACTGCCCTGTGAGCAGCAGGGAGAGAGCTCGCAGGAGGTGATGCAGCTCTTGCCATTGCTGAGGAGCAGTCTGACTTCAGGGAGAGAGACCGAGGCCCATGGAGTGCACGACAGCTTCTTCCTGTCCTGGTATTCCTGAGCACAGTAACTCTGGGGCTGAGGAGCCTCCTCTGCAATGCCAGGAGAGAGATGCCTCATGCACAAGGGCAGCTGGACGCATCCAGCAGGGTGCTCCTGCAGAGCCACCACCCCCACGCTCCCCATAAACTCCAGAAAGGGGCTGTTTTTGCCATGCCACGCCTGCCATTAACCAGTCACATTTCCTTGACAGGTTGAGTTCACATGTCACAATAAGATGTGCTGTATGCCACAGGAGCTCCTGCTCAGCTTGTATTTCGTGTGCTGATTGTGATAGAATTGCTTTACCAAAAGAGCAGTATTAACAGGTGCCACATGTTCTGATGTTTATTTCCTTCTGTATTTACAAGTATTATGTAGGAAAAGTATATTTTTTATGGACTCGTTTTCATGGTCAGGTAATTTCATCTTTCATTATTCATAAGAAGTCGTCATTCATAATGCTGTGGGGTTCTAAAAGGGTGCAAAAGTAAACACATTCTAAATTGCTGTTTGCCACCAAATTTCGTACTTTTTAGTTAAAATAAAGAACAAGTTGCCTATAGGAGTCAGTGAAAAAAGTGACCTATGTGTGCAGAAAAAAAAATAGCAGTAATGGTTCAGATTGATATTTTCTGTATATTGTTACAGGTTTTTTTTCTGTGTTTAAGAACACCTCATGTAACAGGGCTGTGTTTGACTTGCAAAGAAACTGCTAAAGTTGGGCTCAGCAGCCTTTTGTTTTAAATAAAAGGGAGATATCCAGATAAAGTTGGCTGGACCCTGCTTGTCCCCAAGGTTTTGTTCTGAAGGTAGAAATGCATTTTCCTCCATGGACTTCATTGTGTGACAGAGATGTTGTCTATGAATAAATGTGTGATTTGGACATAATAGCTTTTTCTGTCTTTGAAGTGGAAGCGTTTTTTATTCAGAGTAACTGAATGGTAACTGTCATGTGGAAAAACATAAGGTAACTCTGGCTGGTATTTCTTGTTTGTGGGTTGGTTTGGTTTTTCTTGTTTATTTGTTTTTGTTCACTGTGTTTGTTTGTTAAAAGTGCTGGTGCCCTCCTGGGAACTTATTTTCACAGTCAACAAGGAGAGACACAAACCACTTCCAGGAGCCTCTGAGTTGCTTCCCACGAAAGGTTTTCCTGGGTAGTGGTGTAAAAGCCTTTTGGTTTCTAGATGGTGTTTCGCAGGGTTTTCCTTTAGAGCCGCCCTTGCAATCCAGAGCTCTTCCCAATGGGCTTCTGAAGACTTCAGTTTGATTCCATCAGGAAAGTGAATTGTAAGCAGTGTTTTCATTCCATCACTGAGGACCGACCTGTTCTTGCCAAAGATCTGTGGTTTGGGTGTTTGCTTACCCAAAAATGTGACACTGAATTGCTTAACAGGGTTTGTGACTCGTTACACCCAGCTTGAGTAGCAGCATAGAGAGGATGCATCATCATCACTAATCGTGGCTGGTATTGCTCCTTTGTGCTGGCTGTTGGGAGCAGAGGGTGGAGTTTCAGCCCTTCAGTCTCCCTGAGCTGAGGCTTGCCTCCTGCTTTCAAGTTTGCCTTCTTTCCATCAAGTGTGTGATGGAAGCTGGAGATTATCCTCTTTAAAAATAGGAACCAAAGACCCACTGAAGAATTGGCAACTTTTTTTTTTTCTTCTGATTTTGCTGGTATTAAAAATATTTTATATCCTGTTTTCACTGTCTTTACACCAATGGTTGAAAGCAGTATTTGGTCTGTGACTTTGCTGGAG
Seq C2 exon
AGGGAAAACCGCAGGCTCCAAGAAGCTAGCATGAGGCTGGAGCAGGAGAATGATGACCTTGCCCATGAGCTTGTAACAAGCAAAATTGCCTTACGGAATGACCTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000007287fB11230
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]