HsaEX0051810 @ hg19
Exon Skipping
Gene
ENSG00000152061 | RABGAP1L
Description
RAB GTPase activating protein 1-like [Source:HGNC Symbol;Acc:24663]
Coordinates
chr1:174926594-174938524:+
Coord C1 exon
chr1:174926594-174926686
Coord A exon
chr1:174927028-174927310
Coord C2 exon
chr1:174938414-174938524
Length
283 bp
Sequences
Splice sites
3' ss Seq
TAATATTTCTTTTCTTTCAGTTT
3' ss Score
9.37
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GTACCAACCAAGAAGCTGAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAACAGGAAGACCCAATGGATAGATACAAG
Seq A exon
TTTGTATATTTGTAGGTAACTCCAGCTGTTGCATTTATACTGGGAATCTTCATAAGAAGCTGAGAGAAAGAGAGGGGAAAAAGAAAGTGGCTTTCTACTTTCAAAAATGAAACAAAAAGGAAAAATGGCAAAGTACTGTTTTAGCTGTGCATGTCATATCCACAAAGACTTTTAGCAGGTGAACTGTTCCAAGACTGACACAAGGATGTTTCAAACTTGCCTCTGTCTGTAGAAAATGTTAAAAATACCAACTCACTTGGAAGGAAAAATAAAAATCACAAAG
Seq C2 exon
AGGGAGAACCGAAGATTACAGGAGGCCAGCATGAGGTTGGAACAAGAGAATGATGACCTTGCCCATGAACTAGTAACAAGCAAAATTGCTCTACGGAATGACTTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152061_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.248 A=0.068 C2=0.428
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAACCAAGAAGCTGAAGA
R:
CTGATCCAAGTCATTCCGTAGAGC
Band lengths:
204-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)