BtaEX0022244 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024482 | MGC157043
Description
MGC157043 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A7YY30]
Coordinates
chr16:57651501-57662368:+
Coord C1 exon
chr16:57651501-57651593
Coord A exon
chr16:57651778-57652066
Coord C2 exon
chr16:57662258-57662368
Length
289 bp
Sequences
Splice sites
3' ss Seq
TAATATTTCTTTTCTTTCAGTTT
3' ss Score
9.37
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GTACCAACCAAGAAGCTAAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAGCAGGAAGACCCAATGGATAGATACAAG
Seq A exon
TTTGTATATTTGTAGGTGACTTCACCTGTTGCATTTATACTGGGAGTCTTCATAAGAAGCTGAAAGAAAGGGAAAAAGAAAAGAGAGAAAGTGGCTATCAACTACTTTCAAAAATGAGAAAAAAGAAAAATGGCAAAGTATGGTTTTAGCTGTGCACGGTACATCCACAAAGACTGTTAGAAGGCGAACTGTTCCAAGACTGGCCCGATAACGTTTCAGACTCACCCCTGTCTGGAGCCAATGTTAAAGACACAAACTCATTCAAAAGTAAAGAATAAAAACCACAAAG
Seq C2 exon
AGGGAGAACCGGAGACTACAGGAGGCCAGCATGAGGTTGGAACAAGAGAATGATGACCTTGCTCATGAACTAGTAACCAGCAAGATTGCTCTGCGGAATGACTTGGATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024482_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=0.000 C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000033990fB4269
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAACCAAGAAGCTAAAGAAA
R:
TTGATCCAAGTCATTCCGCAGA
Band lengths:
204-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development