GgaEX1051263 @ galGal4
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr5:8944919-8949086:+
Coord C1 exon
chr5:8944919-8945041
Coord A exon
chr5:8945477-8945593
Coord C2 exon
chr5:8948883-8949086
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTTATCCTGTTTAGAGA
3' ss Score
7.38
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACATTAATGAATGTAGCATCAACAACGGTGGCTGCCAACAGCTGTGTGTGAACACACCGGGAGACTATGAATGCCTGTGCCATTCTAACTACAAATTACACTGGAATAAAAAGGATTGTGTTG
Seq A exon
AGATAAAGGAGTCCTTTCCTGATAATATGTCACCCAAGGTATTGCTGCACTGCATGAAGAGTGGCAGGAGTGATAGATGCTTCTTAAGCTGCTCTTCAGATGTCCGGGTAGTTTCTG
Seq C2 exon
ACACGTGTGATGTGCGCTGCGCCCGAAAAAAGACAGAGAAGAGGTTCCGTAAAACCATCCGAACCTTACGGAAGACGGTCAGCAGGGACCAGTTCCGCGTCCGTGTCTCTGGCATGGACCACGAAGTGGCCAGGAAGTCCCTCAAGCTGTCGGAGCCACAGCAGTCGTGCGGTGTGGGACAGATGCATGTGGGTAGCAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892_MULTIEX1-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.101
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCATCAACAACGGTGGCTG
R:
GACTTCCTGGCCACTTCGTG
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]