GgaEX1051642 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:22200597-22201421:+
Coord C1 exon
chr10:22200597-22200834
Coord A exon
chr10:22200920-22201035
Coord C2 exon
chr10:22201258-22201421
Length
116 bp
Sequences
Splice sites
3' ss Seq
CACAGCCGCTGTGTTTGCAGACG
3' ss Score
6.56
5' ss Seq
CAGGCAGGA
5' ss Score
2.03
Exon sequences
Seq C1 exon
CCCGGCCAATCTCCGCTCTCTCCACAGTGCATCACCAGCCACACGCGGCACCTGAAGATCAACTCGTCCCTGCAGATGCCGGACCGCGTGCTGAACTTCGTCAAAGACCACTTCCTGATGGACAGCCCGGTGCGCAGCCAGCCGCTGCTGCTGCAGAGCCGCCTGCGCTACCAGCAGATCGGCGTGCACCGCGTGCAGGGGCTGCGCGGCACCTACGACGTCCTCTTCCTGGGCACGG
Seq A exon
ACGATGGCCGCTTGCACAAGGCAGTGCGTGTGAACCACCGGGTGCACATCATCGAGGAGATCCGCCTTTTCCCCACTGGGCAGCCCATCCTGCAGTTGCTGCTGGACCACGAGCAG
Seq C2 exon
GGCCTGGTCTATGCGGCCTCCTACACGGCAGTGGCTCAGGTGCCCTTCTCTAACTGCAGCCTGTACCGCAGCTGCGGTGAGTGTGTGCTGGCACGGGACCCCTTCTGTGCCTGGAGCCACGGCGCCTGCCGCAGCACCGCCCCGCACCCCCCGGCGCATCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008297-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.055
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(66.7=97.5)
A:
PF0140314=Sema=FE(32.5=100)
C2:
PF0143720=PSI=PU(68.5=67.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCAACTCGTCCCTGCAGA
R:
GCTGCAGTTAGAGAAGGGCAC
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]