GgaEX1051642 @ galGal4
Exon Skipping
Gene
ENSGALG00000008297 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr10:19533663-19534460:+
Coord C1 exon
chr10:19533663-19533873
Coord A exon
chr10:19533959-19534074
Coord C2 exon
chr10:19534297-19534460
Length
116 bp
Sequences
Splice sites
3' ss Seq
CACAGCCGCTGTGTTTGCAGACG
3' ss Score
6.56
5' ss Seq
CAGGCAGGA
5' ss Score
2.03
Exon sequences
Seq C1 exon
TGCATCACCAGCCACACGCGGCACCTGAAGATCAACTCGTCCCTGCAGATGCCGGACCGCGTGCTGAACTTCGTCAAAGACCACTTCCTGATGGACAGCCCGGTGCGCAGCCAGCCGCTGCTGCTGCAGAGCCGCCTGCGCTACCAGCAGATCGGCGTGCACCGCGTGCAGGGGCTGCGCGGCACCTACGACGTCCTCTTCCTGGGCACGG
Seq A exon
ACGATGGCCGCTTGCACAAGGCAGTGCGTGTGAACCACCGGGTGCACATCATCGAGGAGATCCGCCTTTTCCCCACTGGGCAGCCCATCCTGCAGTTGCTGCTGGACCACGAGCAG
Seq C2 exon
GGCCTGGTCTATGCGGCCTCCTACACGGCAGTGGCTCAGGTGCCCTTCTCTAACTGCAGCCTGTACCGCAGCTGCGGTGAGTGTGTGCTGGCACGGGACCCCTTCTGTGCCTGGAGCCACGGCGCCTGCCGCAGCACCGCCCCGCACCCCCCGGCGCATCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008297-'26-21,'26-20,27-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.055
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(15.9=100)
A:
PF0140314=Sema=FE(8.6=100)
C2:
PF0143720=PSI=PU(68.5=67.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCAACTCGTCCCTGCAGA
R:
GCTGCAGTTAGAGAAGGGCAC
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]