GgaEX1051643 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:22200920-22201606:+
Coord C1 exon
chr10:22200920-22201035
Coord A exon
chr10:22201258-22201421
Coord C2 exon
chr10:22201512-22201606
Length
164 bp
Sequences
Splice sites
3' ss Seq
GCTGTGCCTCCTCCCCACAGGGC
3' ss Score
12.66
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ACGATGGCCGCTTGCACAAGGCAGTGCGTGTGAACCACCGGGTGCACATCATCGAGGAGATCCGCCTTTTCCCCACTGGGCAGCCCATCCTGCAGTTGCTGCTGGACCACGAGCAG
Seq A exon
GGCCTGGTCTATGCGGCCTCCTACACGGCAGTGGCTCAGGTGCCCTTCTCTAACTGCAGCCTGTACCGCAGCTGCGGTGAGTGTGTGCTGGCACGGGACCCCTTCTGTGCCTGGAGCCACGGCGCCTGCCGCAGCACCGCCCCGCACCCCCCGGCGCATCCCCA
Seq C2 exon
GCTGTGGGCTCAGGACATCGAAGGTGCCGAGACAGAGCGGCTCTGCCAGCCAGCCAACGTGTCCCAGCCCCGGCCCCGCGTCCTCCTGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008297-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.055 C2=0.394
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(32.5=100)
A:
PF0143720=PSI=PU(68.5=67.3)
C2:
PF0143720=PSI=PD(29.6=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGCCGCTTGCACAAG
R:
CTGGAGGCAGGAGGACGC
Band lengths:
210-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]