MmuEX6011765 @ mm9
Exon Skipping
Gene
ENSMUSG00000030539 | Sema4b
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:MGI Symbol;Acc:MGI:107559]
Coordinates
chr7:87365328-87368902:+
Coord C1 exon
chr7:87365328-87365443
Coord A exon
chr7:87365674-87365840
Coord C2 exon
chr7:87368820-87368902
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTTCATGTTTGGCTGTGTAGGGA
3' ss Score
5.52
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGATGGCCGCCTGCACAAAGCAGTGACCCTGAGCTCCAGAGTCCACATCATTGAGGAGCTGCAGATCTTCCCTCAAGGACAGCCTGTGCAGAACCTGCTCTTGGACAGCCATGGG
Seq A exon
GGACTGTTGTATGCCTCCTCCCATTCCGGGGTGGTGCAAGTGCCCGTAGCCAACTGCAGCCTGTACCCAACCTGTGGAGACTGCCTCCTGGCTCGAGACCCCTACTGCGCCTGGACTGGCTCTGCCTGCAGGCTCGCTAGCCTCTACCAGCCTGATCTGGCCTCCAG
Seq C2 exon
GCCATGGACCCAGGACATTGAGGGTGCCAGTGTCAAGGAACTCTGCAAGAATTCCTCATACAAGGCCCGGTTTCTTGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030539-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.7=100)
A:
PF0143720=PSI=PU(65.5=67.9)
C2:
PF0143720=PSI=PD(32.8=65.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGCCGCCTGCACAA
R:
CACAAGAAACCGGGCCTTGTA
Band lengths:
194-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: