HsaEX0057093 @ hg19
Exon Skipping
Gene
ENSG00000185033 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:10730]
Coordinates
chr15:90768514-90770879:+
Coord C1 exon
chr15:90768514-90768629
Coord A exon
chr15:90768893-90769059
Coord C2 exon
chr15:90770789-90770879
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCCCGTGTCTGGCTGTGCAGGGG
3' ss Score
6.89
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGACGGCCGGCTCCACAAGGCAGTGAGCGTGGGCCCCCGGGTGCACATCATTGAGGAGCTGCAGATCTTCTCATCGGGACAGCCCGTGCAGAATCTGCTCCTGGACACCCACAGG
Seq A exon
GGGCTGCTGTATGCGGCCTCACACTCGGGCGTAGTCCAGGTGCCCATGGCCAACTGCAGCCTGTACAGGAGCTGTGGGGACTGCCTCCTCGCCCGGGACCCCTACTGTGCTTGGAGCGGCTCCAGCTGCAAGCACGTCAGCCTCTACCAGCCTCAGCTGGCCACCAG
Seq C2 exon
GCCGTGGATCCAGGACATCGAGGGAGCCAGCGCCAAGGACCTTTGCAGCGCGTCTTCGGTTGTGTCCCCGTCTTTTGTACCAACAGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185033-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(52.0=78.0)
A:
PF0140314=Sema=PD(0.1=0.0),PF0143720=PSI=PU(67.3=66.1)
C2:
PF0143720=PSI=PD(29.1=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCACAAGGCAGTGAGC
R:
GGTACAAAAGACGGGGACACA
Band lengths:
187-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)