GgaEX1053292 @ galGal3
Exon Skipping
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75886082-75887944:-
Coord C1 exon
chr4:75887777-75887944
Coord A exon
chr4:75886294-75886410
Coord C2 exon
chr4:75886082-75886206
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCCCTGTTTTTCTAGATT
3' ss Score
10.71
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCCGGCATCTCTTTGCAGAAACAGACCTGCCTGATCTTGCCATCGGTCTCATACTTCTGGCTTTGTCCCTGCTTGTTCTTTGCTCCTGTTTGGTGATGATCGTTAAGCTGTTAAACTCTGTGCTTAAAGGACAAGTAGCAAGTGTTATCAAGAAGACAATCAACACTG
Seq A exon
ATTTCCCATTTCCTTTTACTTGGCTGGCTGGATACCTGGCTATGCTTGCAGGGGCTGGCATGACTTTCGTTGTTCAAAGTAGTTCTGTCTTCACGTCTGCTATTACACCTCTTGTTG
Seq C2 exon
GCATTGGTGTTATAAGCATTGAGCGTTCTTATCCCCTCACCCTAGGAGCTAACATTGGCACAACCACAACAGCTATACTTGCAGCTTTAGCAAGCCCAGGGAGTACATTAAAATATTCATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372-'13-15,'13-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCCTGATCTTGCCATC
R:
TGTACTCCCTGGGCTTGCTAA
Band lengths:
252-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]