RnoEX0082281 @ rn6
Exon Skipping
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60259754-60260677:-
Coord C1 exon
chr14:60260510-60260677
Coord A exon
chr14:60259970-60260086
Coord C2 exon
chr14:60259754-60259878
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTCTTTGTCTTCCAGATT
3' ss Score
11.63
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCCAGCACATCTTCGTGAATTTCAGCCTCCCAGACCTCGCTGTGGGCATCATCCTGCTCACTGTCTCCCTGCTGATCCTTTGCGGCTGTCTGATCATGATTGTCAAACTGTTGGGTTCTGTGCTCAGGGGACAGGTTGCCACTGTCATCAAGAAGACCCTTAATACTG
Seq A exon
ATTTCCCCTTTCCCTTTGCCTGGCTGACTGGCTACCTGGCCATCCTTGTGGGGGCAGGCATGACCTTCATAGTGCAAAGCAGCTCTGTGTTCACTTCTGCCATGACGCCACTCATCG
Seq C2 exon
GTATTGGGGTGATCAGCATCGAGAGGGCATATCCACTCACGCTGGGCTCCAACATTGGCACCACCACGACTGCCATTCTGGCTGCCTTGGCCAGCCCAGGCAACACATTGAGGAGTTCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626-'9-15,'9-14,10-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCATCCTGCTCACTGTC
R:
GGAACTCCTCAATGTGTTGCCT
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]