MmuEX6017686 @ mm9
Exon Skipping
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53458806-53459707:+
Coord C1 exon
chr5:53458806-53458973
Coord A exon
chr5:53459368-53459484
Coord C2 exon
chr5:53459583-53459707
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCTTTGTCTTCCAGATT
3' ss Score
11.54
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GTCAGCACATCTTCGTGAACTTCAGTCTCCCAGACCTTGCTGTGGGCATCATCTTGCTTACTGTCTCCCTGGTGGTCCTCTGTGGCTGTCTGATCATGATAGTCAAGCTGTTGGGTTCTGTGCTCAGGGGACAAGTCGCTACTGTCATCAAGAAGACCCTGAATACTG
Seq A exon
ATTTCCCCTTTCCCTTTGCTTGGCTGACTGGCTACCTGGCCATCCTTGTGGGGGCAGGCATGACCTTCATCGTGCAAAGCAGCTCTGTGTTCACGTCTGCCATGACTCCACTCATCG
Seq C2 exon
GTATTGGGGTGATCAGCATTGAGAGGGCATATCCACTCACGTTGGGCTCCAACATTGGCACCACCACCACCGCCATTCTGGCTGCTTTAGCCAGCCCAGGCAACACCTTGAGGAGTTCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAACTTCAGTCTCCCAGA
R:
CCTGGGCTGGCTAAAGCAG
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: