GgaEX1053595 @ galGal3
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51858424-51864448:+
Coord C1 exon
chr4:51858424-51858496
Coord A exon
chr4:51862518-51862586
Coord C2 exon
chr4:51864275-51864448
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCTGCACTTTTCCCCCGCAGTTC
3' ss Score
10.49
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGAGCAGAGAGTCACTGGAGTCATTGTTTTCATTCTGACTGGTGTGTCTGTCTTTATGGCTCCTATCTTGAAG
Seq A exon
TTCATTCCTATGCCTGTGCTCTATGGTGTCTTCCTGTACATGGGTGTTGCATCCCTCAATGGCGTGCAG
Seq C2 exon
TTCATGGATCGTCTGAAGCTGCTCTTGATGCCTCTAAAGCACCAGCCTGATTTTATCTATCTGCGTCATGTCCCGCTGCGCAGGGTCCATCTGTTCACGTTTCTGCAGGTGGTTTGCTTAGCCCTACTCTGGATTCTCAAGTCAACTGTGGCCGCTATCATATTCCCTGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'29-27,'29-26,30-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.6=100)
A:
PF0095516=HCO3_cotransp=FE(4.2=100)
C2:
PF0095516=HCO3_cotransp=PD(6.5=58.6),PF103594=Fmp27_WPPW=PU(1.1=1.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGAGAGTCACTGGAGT
R:
AACGTGAACAGATGGACCCTG
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]