GgaEX1053595 @ galGal4
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49771833-49777857:+
Coord C1 exon
chr4:49771833-49771905
Coord A exon
chr4:49775927-49775995
Coord C2 exon
chr4:49777684-49777857
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCTGCACTTTTCCCCCGCAGTTC
3' ss Score
10.49
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGAGCAGAGAGTCACTGGAGTCATTGTTTTCATTCTGACTGGTGTGTCTGTCTTTATGGCTCCTATCTTGAAG
Seq A exon
TTCATTCCTATGCCTGTGCTCTATGGTGTCTTCCTGTACATGGGTGTTGCATCCCTCAATGGCGTGCAG
Seq C2 exon
TTCATGGATCGTCTGAAGCTGCTCTTGATGCCTCTAAAGCACCAGCCTGATTTTATCTATCTGCGTCATGTCCCGCTGCGCAGGGTCCATCTGTTCACGTTTCTGCAGGTGGTTTGCTTAGCCCTACTCTGGATTCTCAAGTCAACTGTGGCCGCTATCATATTCCCTGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.6=100)
A:
PF0095516=HCO3_cotransp=FE(4.2=100)
C2:
PF0095516=HCO3_cotransp=PD(6.5=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGAGAGTCACTGGAGT
R:
AACGTGAACAGATGGACCCTG
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]