RnoEX0082838 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20491358-20503300:-
Coord C1 exon
chr14:20503228-20503300
Coord A exon
chr14:20494045-20494113
Coord C2 exon
chr14:20491358-20491531
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCACTGTTTTCCTTCCCAGTTT
3' ss Score
9.61
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGAACAACGAGTCACTGGAACCCTTGTGTTTATTCTGACTGGCCTGTCAGTCTTTATGGCTCCCATCTTGAAG
Seq A exon
TTTATCCCCATGCCTGTTCTGTATGGCGTGTTCTTGTATATGGGGGTGGCCTCACTGAACGGTGTGCAG
Seq C2 exon
TTCATGGACCGTCTTAAGCTGCTTCTCATGCCCCTGAAGCATCAACCTGACTTCATCTACCTGCGCCACGTCCCCCTGCGCCGAGTCCACCTGTTCACCTCCCTGCAGGTGTTGTGCCTGGCTCTGCTCTGGATCCTCAAGTCCACAGTGGCTGCGATTATTTTTCCAGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-'46-42,'46-40,47-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.6=100)
A:
PF0095516=HCO3_cotransp=FE(4.2=100)
C2:
PF0095516=HCO3_cotransp=PD(6.5=58.6),PF103594=Fmp27_WPPW=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGTCAGTCTTTATGGC
R:
TGGACTTGAGGATCCAGAGCA
Band lengths:
179-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]