GgaEX1055869 @ galGal3
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
NA
Coordinates
chr2:19582372-19583357:-
Coord C1 exon
chr2:19583282-19583357
Coord A exon
chr2:19583104-19583199
Coord C2 exon
chr2:19582372-19582518
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTAATCTTTCTTTCTTTAGCTT
3' ss Score
9.58
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCCTAAGGATTGTCTTCGTTCCATTATGAAGAGAGTGAACCATAAGGATCCCCATGTTGCTATGCAGGCTTTAACA
Seq A exon
CTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATCTTTCATTTAGAGGTCTGTTCAAGAGACTTTGCCAGTGAAGTAAGCAATGTGTTGAATAAG
Seq C2 exon
GGTCATCCAAAAGTTTGTGAAAAGCTGAAAGCCCTTATGGTGGAATGGACTGATGAATTCAAAAATGACCCACAGCTTAGTTTAATATCTGCTATGATAAAAAATCTGAAGGAGCAAGGAGTTACTTTCCCAGCTATTGGTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'2-5,'2-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(18.5=100)
A:
PF0079014=VHS=FE(23.0=100)
C2:
PF0079014=VHS=PD(28.9=79.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCCCCATGTTGCTATGC
R:
AGCTGGGAAAGTAACTCCTTGC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]