RnoEX6054233 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81233684-81235438:+
Coord C1 exon
chr17:81233684-81233759
Coord A exon
chr17:81233845-81233940
Coord C2 exon
chr17:81235292-81235438
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTCACTCTGTCTTTACAGCTT
3' ss Score
10.7
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCCTAAAGATTGTCTTCGTTCTATTATGAGAAGAGTGAACCATAAAGACCCCCATGTTGCTATGCAGGCTTTAACT
Seq A exon
CTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATTTTTCACTTAGAAGTGTGTTCAAGGGATTTCGCTAGCGAAGTAAGCAATGTGTTAAATAAG
Seq C2 exon
GGCCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGACCCACAGCTAAGTCTGATATCGGCAATGATTAAGAACCTCAAGGAACAGGGTGTAACATTCCCAGCCATCGGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817-'9-11,'9-9,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(18.5=100)
A:
PF0079014=VHS=FE(23.0=100)
C2:
PF0079014=VHS=PD(28.9=79.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCCCCATGTTGCTATGC
R:
GGCTGGGAATGTTACACCCTG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]