MmuEX0045260 @ mm9
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14037444-14039162:+
Coord C1 exon
chr2:14037444-14037519
Coord A exon
chr2:14037605-14037700
Coord C2 exon
chr2:14039016-14039162
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCTCACTCTATCCTTGCAGCTT
3' ss Score
10.08
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACCTAAAGATTGTCTTCGTTCCATTATGAGAAGAGTGAACCATAAAGACCCCCATGTTGCTATGCAAGCCTTAACT
Seq A exon
CTTCTGGGAGCATGTGTATCAAACTGTGGCAAAATTTTTCACTTAGAAGTATGTTCAAGAGACTTTGCTAGTGAAGTAAGCAATGTATTAAATAAG
Seq C2 exon
GGTCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGATCCACAGCTTAGTCTGATATCGGCAATGATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'7-4,'7-3,8-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(18.5=100),PF136461=HEAT_2=FE(22.5=100)
A:
PF0079014=VHS=FE(23.0=100),PF136461=HEAT_2=FE(27.9=100)
C2:
PF0079014=VHS=PD(28.9=79.6),PF136461=HEAT_2=PD(20.7=46.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCCCCATGTTGCTATGC
R:
AGCTGGGAATGTTACACCTTGT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: