GgaEX1058433 @ galGal4
Exon Skipping
Gene
ENSGALG00000004087 | THSD4
Description
thrombospondin, type I, domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr10:5853271-5879757:+
Coord C1 exon
chr10:5853271-5853340
Coord A exon
chr10:5867756-5868195
Coord C2 exon
chr10:5879328-5879757
Length
440 bp
Sequences
Splice sites
3' ss Seq
TCAGTCTGTTGTATCTACAGGTT
3' ss Score
9.54
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
ACTTCTCAGTTCACTAGCAGTGCTGGGATTTCAGTTTGTCATCCCACAGCCTTCAATTGAACACAGAAAG
Seq A exon
GTTCCCCAGAGGATAGAAGAGCAAAGAGATGCATCTGAAGATAGCGGCGCGGGAATCCCAGGCATGTGGGGCAGCTGGGGCCCCTGGTCTGCCTGCTCCAGGAGCTGCAGCGGTGGTGTGATGGAGCAAACGAGGCCGTGCCTCCCGGCGTACTACCGCGAAAGGGGCTACCAGAGGCCGGGGCGGCAATACGCGGCCTCGGAGAGAACTCTTGCTCACCAGAACTCCCGGCACCAGGACTCACTGACTGCTTACCCAGGCCACATCATTTCTGCCATCCGTACGTCTGTGCCGCTTCACAGGAATGAAGAGCAGCTCCGGGCCGGCCTGCGGGCTTCTGCTCCTTCCGAAGGCCATAACAACAGCCACATGAGCCGAGGAGCTCCCAGAGGCAGCCGGCACTCTCAGTCCCAGAGGCATCACCCCAAGCCAGAAAAGAG
Seq C2 exon
AAGCAGAAACAGAAATCCTATTGGTCCAGGAAAGTATGGATATGGAAAAGTGCCATACATTTTACCTTTACAAACTGATACTGGTCAGCAGCCTCAGAAACTTCGAAGGCAGCGACAGTCATCAAGGAACAATGTATTTCATCAGAGTCCAAGTCTCATGAACGCTTACAGCCAGCCAGCCAGCGCTTCTCTCCAACATGGGAACCTTTATCAAGAAGAAAGCGGGCCGCAGGCTGGTCACCAGGTCCTTGGACCCTCAGTTTATCAGTCACCTTCATTTCCTGCATCTCAGAACTTGTTTCACAGCAGTGACTCAACCCTTCATGGATCTGCATCACACCCAATGGTCCAGGGTCAGCCCCAGCCTCAAAGGTCTGCAGCTATTGTATGTGTTGGCACCTACAAGCAATATAAACTCTGCAACACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004087-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.741 C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=22.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCATCCCACAGCCTTCAA
R:
AAGGGTTGAGTCACTGCTGTG
Band lengths:
357-797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]