RnoEX0004015 @ rn6
Exon Skipping
Gene
ENSRNOG00000051285 | AABR07070312.1
Description
NA
Coordinates
chr8:65282796-65373351:-
Coord C1 exon
chr8:65373282-65373351
Coord A exon
chr8:65319056-65319417
Coord C2 exon
chr8:65282796-65283243
Length
362 bp
Sequences
Splice sites
3' ss Seq
ACCAGCCTCTGTCTCCACAGGTC
3' ss Score
11.87
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TGCCCTGGGCGCCCTCCTGCTGCTTGGTTCTCAGCTTGTCTGCCCGCAGCCCTCCACTGAACACAGAAAG
Seq A exon
GTCCCACAACGGATGGCAGTGGCCGAGGGAACCCCAGAGGATAGTGGTGGCGGCTCCCCAGGTGTGTGGGGCTCCTGGGGCCCCTGGTCTGCCTGTTCACGCAGCTGCAGCGGTGGTGTGATGGAGCAGACACGGCCCTGCCTTCCCAGCTCCTACCGCGCACCAGCAGGCTCCCGGCCCAGTGGCCCTACACTGTCCATCACTGGCCACGTTGTGTCAGCTGTACGGACCTCAGTACCACTGCATCGAAGCCACGAAGAGCAGCGTACCCTGGCTGGCTCCAGTGCCAGCCGCCAAGGCCCCACGGTGGTGCGAGGCAGCCGACACCCTCAGGCCCGGAGCCGTGAACCTTCAGAGAGAAG
Seq C2 exon
GAGCAGGACCCGAGGTCCCATTGGCCCTGGCAAGTATGGCTATGGGAAGGCTCCCTACATCTTACCACTGCAGACGGATACCACACATACTCCACAGAGGCTTCGGAGACAAAGGCCTTCATCCAGACCCTCCAGGTCCCAGGAGGCATCTGCTTCTAAGCAGGGCTACAGGCCACCAACCCACCACTTCTCTCACAACAGACCTCTCTACCAGAGTGACAGTGGCCCTCGTTCTGGACTGCCACCTTCCGAGGCCTCTATCTACCAGCTGCCCTTGACTCACGATCAAAACTACCCTGCAGCTTCAAGTCTCTTCCACAGCCCGGAATTGAGCAGCAACAATGGTGCTAGGCCCCACGGGACATCTCAGGCCTTCTCTCAGCATCTGCGATCAACAGCAATCTCCTGCATCGGGGCCTATCGGCAGTACAAACTGTGCAACACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051285-'4-7,'4-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCTGCTTGGTTCTCAG
R:
TTGATCGTGAGTCAAGGGCAG
Band lengths:
346-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]