MmuEX0047256 @ mm9
Exon Skipping
Gene
ENSMUSG00000032289 | Thsd4
Description
thrombospondin, type I, domain containing 4 [Source:MGI Symbol;Acc:MGI:2672033]
Coordinates
chr9:60241906-60330302:-
Coord C1 exon
chr9:60330230-60330302
Coord A exon
chr9:60275971-60276332
Coord C2 exon
chr9:60241906-60242353
Length
362 bp
Sequences
Splice sites
3' ss Seq
ACCAGCCTCTGTTTCTATAGGTC
3' ss Score
9.76
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TGCCCTGAGCACCCTCCTGCTGCTGCTTGGTTCTCAGCTTGTCTGCCCGCAGCCTTCCACTGAACACAGAAAG
Seq A exon
GTCCCACAACGGATGGCAGTGACCGAGGGAACCCCAGAGGACAGTGGCAGTGGCTCCCCAGGTGTGTGGGGCTCCTGGGGCCCCTGGTCTGCCTGTTCTCGCAGCTGCAGTGGTGGTGTGATGGAGCAGACACGGCCCTGCCTGCCCAGCTCCTACCGTGCTCGAGGAGGCTCCCGGCCCAATGGCCGTGCACTGTCCATCACTGGCCACGTTGTGTCAGCCGTACGGACCTCAGTACCACTGCATCGAAGCCAGGAGGACCAAAGAGCCCTGGCTGGCTCCAATGCTAGCCGCCAAGGCCCTGCAGTGGTGCGAGGCAGCCGACATCCACAGGCCCGGGGCCGTGAACCCTCAGAGAGAAG
Seq C2 exon
GAGCAGGACCCGAGGTCCTATTGGCCCTGGCAAGTATGGCTATGGGAAGGCTCCCTACATCTTACCACTGCAGACGGATACCACGCATACTCCACAGAGGCTTCGGAGACAGAGGCCTTCATCCAGGCACTCCAGGTCCCAGGAGGCATCTGCTTCTAAGCAGGGCTATCGGCCACCAACCCATCAGTTCTCCCACAGCCAACCTCTCTACCAGAGTGACAGTGGCCCTCGCTCTGGACTGCCACCTTCTGAGGCTTCTATCTACCAGCTGCCCTTGACTCACGACCAAAGCTATCCTGCAGCGTCGAGTCTCTTCCACAGACCGGAACTGAGCAGCCACCATGGTGCTAGGCCCCACGGGGCAGCTCAAGCCTTTCCCCAGCATCTGCGATCAACAGCAATCTCCTGCATCGGGGCCTATCGGCAGTACAAACTGTGCAACACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032289_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=0.778 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=28.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTTGGTTCTCAGCTT
R:
TGCAGGATAGCTTTGGTCGTG
Band lengths:
355-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: