GgaEX1063099 @ galGal3
Exon Skipping
Gene
ENSGALG00000011433 | VIL1
Description
NA
Coordinates
chr7:24089350-24090050:-
Coord C1 exon
chr7:24089818-24090050
Coord A exon
chr7:24089588-24089733
Coord C2 exon
chr7:24089350-24089494
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCATGCTGCTCACTCTGTAGGGC
3' ss Score
7.74
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
GGTGGGCAAAACTGGGTGGCTGTGTGACCTCTTCCTATACCCGCTGTTCCCAGAACGGCTCCTCGCGGGCGGGCGGCACGGAGCCGGCGTCCTCCACTAGGCTATTCCACGTGCACGGCACCAACGAGTACAACACCAAGGCCTTCGAGGTGCCCGTCCGAGCCGCTTCTCTCAACTCCAACGATGTCTTTGTGCTCAAGACGCCCAGCTCCTGCTACCTCTGGTATGGGAAG
Seq A exon
GGCTGCAGCGGGGATGAGCGTGAGATGGGCAAGATGGTGGCCGACCTCATCTCCAAGACGGAGAAGCCGGTGGTCGCTGAAGGGCAGGAGCCGCCCGAGTTCTGGGTAGCTCTGGGCGGCAAGACCAGCTACCCCAACAGCAAGAG
Seq C2 exon
GCTCCAGGAAGAGAATCCCTCTGTGCCCCCCCGGCTCTTTGAATGCTCTAACAAGACAGGCAGGTTCTTGGCCACTGAGATCGTCGACTTCACCCAGGATGACCTGGACGAGAACGATGTTTACCTGCTGGACACTTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.245 C2=0.204
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(1.2=1.3),PF0062617=Gelsolin=PU(47.8=42.3)
A:
PF0062617=Gelsolin=PD(49.3=69.4)
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAACGAGTACAACACCA
R:
TCCCAAGTGTCCAGCAGGTAA
Band lengths:
257-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]