DreEX6090012 @ danRer10
Exon Skipping
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:211235-212084:-
Coord C1 exon
chr11:211905-212084
Coord A exon
chr11:211637-211779
Coord C2 exon
chr11:211235-211379
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTCTCAGGGC
3' ss Score
10.9
5' ss Seq
ACGGTAAAA
5' ss Score
6.53
Exon sequences
Seq C1 exon
GGTGGGACGTCCCGTAAGGGCCCAGTGGAGCCAGAGCCGCCCGTCCGGCTGTTCCAGATCTGCGGCTCGCACCCATCCAGCACTCGCGCCGTGGAGGTTCCAGCGCTGGCGGCGTCGCTCAACTCCAACGACGTGTTCCTGCTGAAGAGCCAGAGCGGAGTTTACCTGTGGTACGGGAAA
Seq A exon
GGCTCCAGCGGGGACGAGCGTGCGATGGCGAAGGATCTGAGTGTGATCATGGGTCGCTCAGAGCAGGTGATGGCGGAGGGTCAGGAGCCGGAGGAGTTCTGGCAGAGTCTGGGTGGACGAACGCCATACGCCAGCGACCGACG
Seq C2 exon
TTTGCAGCAGGTGACTCTGGAGCACCAGCCGCGTCTCTTCGAGTGCTCCAATAAGACGGGACGCTTCACAGCCACTGAGGTCACGCAGTTCACACAGGACGACCTGCGGGAGGACGACGTCATGCTGCTGGACACCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.417 C2=0.122
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(49.3=56.7)
A:
PF0062617=Gelsolin=PD(47.8=68.8)
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGGCTGTTCCAGATCTG
R:
GGTCGTCCTGTGTGAACTGC
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]