MmuEX6051734 @ mm10
Exon Skipping
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127011699-127014243:+
Coord C1 exon
chr10:127011699-127011878
Coord A exon
chr10:127013508-127013653
Coord C2 exon
chr10:127014099-127014243
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCTCACCCCATTCAGGGG
3' ss Score
7.8
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGCGGGACTTCCAGGAAGGGAAACGAGGAGCCGGACCCTCCAGTAAGGCTCTTCCAGATCCACGGGAACGACAAATCCAACACCAAAGCAGTGGAGGTCTCGGCCTCTGCTTCCTCGCTCAACTCCAACGACGTCTTTCTGCTGCGGACTCAGGCAGAGCACTACCTGTGGTACGGCAAG
Seq A exon
GGGTCTAGTGGGGACGAGCGGGCGATGGCTAAGGAGCTGGTCGACCTTCTCTGTGATGGCAATGCGGACACTGTGGCTGAGGGCCAGGAGCCACCTGAGTTCTGGGACCTTCTGGGAGGAAAAACAGCCTACGCTAATGACAAAAG
Seq C2 exon
GCTGCAGCAAGAAACCCTGGACGTCCAGGTCCGGCTCTTTGAGTGTTCCAATAAGACTGGCCGCTTCCTTGTTACGGAGGTCACGGACTTCACCCAGGAGGACCTGAGCCCAGGTGATGTGATGCTTCTGGACACCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-'15-25,'15-19,23-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
PF0062617=Gelsolin=PD(48.6=69.4)
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACCAAAGCAGTGGAGGT
R:
CCAGGTGTCCAGAAGCATCAC
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types