RnoEX6031799 @ rn6
Exon Skipping
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70302536-70304711:+
Coord C1 exon
chr7:70302536-70302715
Coord A exon
chr7:70304001-70304146
Coord C2 exon
chr7:70304567-70304711
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTCCTCACCCCTCAGGGG
3' ss Score
9.74
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGCGGGACTTCCAGGAAGGGAAATGTGGAGCCTGACCCTCCAGTAAGACTCTTCCAGATCCACGGGAACGACAAATCCAATACCAAAGCAGTGGAAGTCTCGGCCTCCGCTTCCTCCCTCAACTCTAATGATGTCTTTCTGCTTTGGACTCAGGCGGAGCACTACCTGTGGTATGGCAAG
Seq A exon
GGGTCAAGTGGGGACGAACGGGCGATGGCTAAGGAGCTGGCAGAGCTTCTCTGTGATGGTGACGCAGACACTGTAGCTGAGGGCCAGGAGCCACCTGAGTTCTGGGACCTTCTGGGAGGAAAAGCCCCCTACGCTAACGACAAAAG
Seq C2 exon
GCTGCAGCAGGAAACCCTGGACATCCAGGTCCGGCTTTTTGAATGTTCTAATAAGACCGGCCGGTTCCTTGTTACTGAGGTCACGGACTTCACCCAGGATGACCTGAGCCCAGGTGATGTGATGCTCCTGGACACCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=0.204 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
PF0062617=Gelsolin=PD(48.6=69.4)
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGGAAATGTGGAGCCTG
R:
CTCAGTAACAAGGAACCGGCC
Band lengths:
246-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]