BtaEX6021843 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55994199-55996413:+
Coord C1 exon
chr5:55994199-55994378
Coord A exon
chr5:55996016-55996161
Coord C2 exon
chr5:55996269-55996413
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCACCCCGTTCTCAGGGG
3' ss Score
9.91
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GGTGGGACTTCTAGGAAGGGAAATGCTGAGCCGGATCCTCCAGTAAGACTCTTCCAGATTCAAGGACATAACAAATCTAACACCAAAGCAGTGGAGGTCCCAGCCTTCACCTCCTCCCTAAACTCCAATGATGTCTTTCTGCTGAGGACGCAGGCAGAGCACTACCTGTGGTTTGGCAAG
Seq A exon
GGGTCTAGTGGGGATGAGCGGGCGATGGCTAAGGAGCTGGCCGGACTTCTCTGTGACGGTACTGAGAACACAGTGGCTGAGGGCCAGGAGCCAGCTGAGTTCTGGGACCTGCTGGGAGGGAAAACTCCCTATGCCAGTGACAAAAG
Seq C2 exon
ACTACAGCAGGAGATCCTAGATGTCCAGTCTCGTCTCTTTGAATGTTCCAATAAGACTGGCCGGTTCACTGTCACTGAGATCATAGACTTTACCCAGGACGACCTGAACCCAGGTGACGTGATGCTCCTGGATACCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
PF0062617=Gelsolin=PD(48.6=69.4)
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCAAAGCAGTGGAGGTC
R:
CTGGTCCCAGGTATCCAGGAG
Band lengths:
247-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]