GgaEX1063099 @ galGal4
Exon Skipping
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22033790-22034437:-
Coord C1 exon
chr7:22034258-22034437
Coord A exon
chr7:22034028-22034173
Coord C2 exon
chr7:22033790-22033934
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCATGCTGCTCACTCTGTAGGGC
3' ss Score
7.74
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
AACGGCTCCTCGCGGGCGGGCGGCACGGAGCCGGCGTCCTCCACTCGGCTCTTCCACGTGCACGGCACCAACGAGTACAACACCAAGGCCTTCGAGGTGCCCGTCCGAGCCGCTTCTCTCAACTCCAACGATGTCTTTGTGCTCAAGACGCCCAGCTCCTGCTACCTCTGGTATGGGAAG
Seq A exon
GGCTGCAGCGGGGATGAGCGTGAGATGGGCAAGATGGTGGCCGACATCATCTCCAAGACGGAGAAGCCGGTGGTCGCTGAAGGGCAGGAGCCGCCCGAGTTCTGGGTAGCTCTGGGCGGCAAGACCAGCTACGCCAACAGCAAGAG
Seq C2 exon
GCTCCAGGAAGAGAATCCCTCTGTGCCCCCCCGGCTCTTTGAATGCTCTAACAAGACAGGCAGGTTCTTGGCCACTGAGATCGTCGACTTCACCCAGGATGACCTGGACGAGAACGATGTTTACCTGCTGGACACTTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433_MULTIEX1-8/11=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.163 C2=0.143
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(47.8=55.0)
A:
PF0062617=Gelsolin=PD(49.3=69.4)
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAACGAGTACAACACCA
R:
TCCCAAGTGTCCAGCAGGTAA
Band lengths:
257-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]