GgaEX1065921 @ galGal4
Exon Skipping
Gene
ENSGALG00000012044 | chAnk2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG08]
Coordinates
chr4:56475144-56644463:-
Coord C1 exon
chr4:56643902-56644463
Coord A exon
chr4:56617927-56617985
Coord C2 exon
chr4:56475144-56475245
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCTTTATTTTCTTTTTGTAGGTA
3' ss Score
11.31
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TTCTTATTCTGTCTTCTGTTCCTCCGCCGTCATTATTTGGCAGAGCTGTAGGCACAGACGTGTTGTAATGCGGCAGCGAAGCCAGCTCGGGCTCCTTTTGAGCAGAACGAGCGCCGCTTGCCAGCCGGCCTGCCGCTCATCAGAGAGCCGGAGCTCCGCGCTCTGTCCGCTCCCAGCTCCTCCACCGTAACCGGCCGTGCTGTGGCTCTCCACCCCAGCCTCAAACGCGACGCCTTCCAACGCGGCTCGGCAGGGCGGGGGCGGCCCGACGGGGCCGCTTTGCCCGCGCCCACACGCCGCCTCTCCGAGCCCGGGGTGGGAGCGGCGGTGCGCGGCTGCGGCTCGGCTCCTCCGCGCGGTGCCGCCCCGGGGCAGGGAGGCAGAGAGGCAGGGCGGGCTGCGGGGGCCGGGCTGCTCCACCGCGTCCTGCGGCACTCGGCACCGCCGCCTGCAGCCGGGGAGCCTTCCTCAGAGGCGCTGCTGCCGACAAACACGAGCGC
Seq A exon
GTAAGTAACTGAATGGGACACGAAGAATTGATGTTTAAATGGCCAGCATGTTGCAAAAG
Seq C2 exon
TCTGACAGCAATGCAAGCTTTCTCCGAGCTGCCAGGGCTGGCAATTTGGACAAAGTAGTGGAATACCTGAAAAGCGGAATAGACATTAACACATGTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'0-5,'0-1,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.002
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=PU(1.5=25.0)
C2:
PF127962=Ank_2=PU(28.4=79.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGAGCCTTCCTCAGAG
R:
AATGTCTATTCCGCTTTTCAGGT
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]