MmuEX6073950 @ mm9
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126951052-127111949:-
Coord C1 exon
chr3:127111763-127111949
Coord A exon
chr3:127042050-127042110
Coord C2 exon
chr3:126951052-126951150
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTTTTCCCTTTAGGTA
3' ss Score
13.88
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AGGCAGCTGGGACTGGCCCGCGGGAAGCACATGGATTACAGTCTGAGGCTGTGATGGGAAAGTCGGTTCCTGGGCTGCTGTCTCATACACATCAGCAGGCAGGGAAGCTGGGGACTCCGACTCGCCCTTCTCCGGGCCCCTCCTGCTGCGTGGTCACAGGCAATCGCTGAGAGAAGCTGCTGCTCCA
Seq A exon
GTAAGTAACTGATCAGGGACATGAAGAACTGCTATTTCAAATGACAACCATGTTGCAAAAG
Seq C2 exon
AGCCAAAACAAGTGTGAGAGCCAAACTACATGCAATGAAGTCACACAATCAAGCTGCATCCAACGCAAGGACCCCAATGGTGTGCATCCCGATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'0-1,'0-0,2-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.625 C2=0.470
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGGGCTGCTGTCTCATA
R:
GGCTCTCACACTTGTTTTGGC
Band lengths:
143-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: