MmuEX0004889 @ mm9
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126807679-127042110:-
Coord C1 exon
chr3:127042050-127042110
Coord A exon
chr3:126951052-126951150
Coord C2 exon
chr3:126807679-126807780
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTAATGTAAATTCTAACAGAGC
3' ss Score
5.71
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTAAGTAACTGATCAGGGACATGAAGAACTGCTATTTCAAATGACAACCATGTTGCAAAAG
Seq A exon
AGCCAAAACAAGTGTGAGAGCCAAACTACATGCAATGAAGTCACACAATCAAGCTGCATCCAACGCAAGGACCCCAATGGTGTGCATCCCGATGACCAG
Seq C2 exon
TCTGACAGCAATGCCAGCTTCCTCCGCGCTGCCAGAGCAGGCAACCTGGACAAAGTGGTGGAATATCTGAAAGGGGGCATTGACATCAATACCTGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'2-8,'2-1,4-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.470 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(29.0=79.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAACTGATCAGGGACATGAAGA
R:
TGATTGCAGGTATTGATGTCAATGC
Band lengths:
159-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: