MmuEX0004889 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:127104761-127339192:-
Coord C1 exon
chr3:127339132-127339192
Coord A exon
chr3:127248134-127248232
Coord C2 exon
chr3:127104761-127104862
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTAATGTAAATTCTAACAGAGC
3' ss Score
5.71
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTAAGTAACTGATCAGGGACATGAAGAACTGCTATTTCAAATGACAACCATGTTGCAAAAG
Seq A exon
AGCCAAAACAAGTGTGAGAGCCAAACTACATGCAATGAAGTCACACAATCAAGCTGCATCCAACGCAAGGACCCCAATGGTGTGCATCCCGATGACCAG
Seq C2 exon
TCTGACAGCAATGCCAGCTTCCTCCGCGCTGCCAGAGCAGGCAACCTGGACAAAGTGGTGGAATATCTGAAAGGGGGCATTGACATCAATACCTGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826_MULTIEX1-2/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.546 A=0.444 C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(29.0=79.4)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAACTGATCAGGGACATGAAGA
R:
TGATTGCAGGTATTGATGTCAATGC
Band lengths:
159-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types