MmuEX6073951 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:127079898-127339192:-
Coord C1 exon
chr3:127339132-127339192
Coord A exon
chr3:127104761-127104862
Coord C2 exon
chr3:127079898-127079996
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTCTTTCTCTTACAGTCT
3' ss Score
11.79
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTAAGTAACTGATCAGGGACATGAAGAACTGCTATTTCAAATGACAACCATGTTGCAAAAG
Seq A exon
TCTGACAGCAATGCCAGCTTCCTCCGCGCTGCCAGAGCAGGCAACCTGGACAAAGTGGTGGAATATCTGAAAGGGGGCATTGACATCAATACCTGCAATCAG
Seq C2 exon
AATGGACTCAATGCTCTCCACCTGGCAGCCAAGGAAGGCCATGTGGGCCTTGTGCAGGAGCTGCTGGGAAGAGGGTCCTCCGTGGATTCTGCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'20-35,'20-32,25-35=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.546 A=0.161 C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
ENSMUST00000182547fB405
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTAACTGATCAGGGACATGAAGA
R:
GTGGCAGAATCCACGGAGG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types