HsaEX6085898 @ hg19
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:493]
Coordinates
chr4:113825611-114117622:+
Coord C1 exon
chr4:113825611-113825670
Coord A exon
chr4:114095572-114095673
Coord C2 exon
chr4:114117524-114117622
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTATTTTTCTCGCAGTCT
3' ss Score
9.03
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTAAGTAATGAAAAGAGACATGAAGAATTGGTATTTCAAATGACCACCATGTTGCAAAAG
Seq A exon
TCTGACAGCAATGCAAGCTTCCTCCGTGCTGCCAGAGCAGGCAACCTGGACAAAGTTGTGGAATATCTGAAGGGGGGCATAGACATCAATACCTGCAATCAG
Seq C2 exon
AATGGACTCAACGCTCTCCATCTGGCTGCCAAGGAAGGCCACGTGGGGCTGGTGCAGGAGCTGCTGGGAAGAGGGTCCTCTGTGGATTCTGCCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362-'2-17,'2-16,14-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=0.081 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF136371=Ank_4=PD(39.6=63.6),PF127962=Ank_2=PU(10.8=24.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAAGAGACATGAAGAATTGGT
R:
GAGGACCCTCTTCCCAGCAG
Band lengths:
133-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)