GgaEX1065924 @ galGal4
Exon Skipping
Gene
ENSGALG00000012044 | chAnk2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG08]
Coordinates
chr4:56464681-56617985:-
Coord C1 exon
chr4:56617927-56617985
Coord A exon
chr4:56475144-56475245
Coord C2 exon
chr4:56464681-56464779
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTATCTTTTTACAGTCT
3' ss Score
8.82
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTAAGTAACTGAATGGGACACGAAGAATTGATGTTTAAATGGCCAGCATGTTGCAAAAG
Seq A exon
TCTGACAGCAATGCAAGCTTTCTCCGAGCTGCCAGGGCTGGCAATTTGGACAAAGTAGTGGAATACCTGAAAAGCGGAATAGACATTAACACATGTAATCAG
Seq C2 exon
AATGGGCTCAATGCTCTGCACCTGGCGGCTAAAGAAGGCCATGTGGGACTGGTACAAGAATTACTGGAAAGAGGGTCGGCTGTGGATTCTGCCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'2-7,'2-5,13-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(1.5=25.0)
A:
PF127962=Ank_2=PU(28.4=79.4)
C2:
PF127962=Ank_2=PD(45.6=93.9),PF127962=Ank_2=PU(8.3=18.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACACGAAGAATTGATGT
R:
GCAGAATCCACAGCCGACC
Band lengths:
138-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]