MmuEX6073951 @ mm9
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126782816-126951150:-
Coord C1 exon
chr3:126951052-126951150
Coord A exon
chr3:126807679-126807780
Coord C2 exon
chr3:126782816-126782914
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTCTTTCTCTTACAGTCT
3' ss Score
11.79
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGCCAAAACAAGTGTGAGAGCCAAACTACATGCAATGAAGTCACACAATCAAGCTGCATCCAACGCAAGGACCCCAATGGTGTGCATCCCGATGACCAG
Seq A exon
TCTGACAGCAATGCCAGCTTCCTCCGCGCTGCCAGAGCAGGCAACCTGGACAAAGTGGTGGAATATCTGAAAGGGGGCATTGACATCAATACCTGCAATCAG
Seq C2 exon
AATGGACTCAATGCTCTCCACCTGGCAGCCAAGGAAGGCCATGTGGGCCTTGTGCAGGAGCTGCTGGGAAGAGGGTCCTCCGTGGATTCTGCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'4-9,'4-8,10-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=0.190 C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF127962=Ank_2=FE(34.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAAACAAGTGTGAGAGCC
R:
GTGGCAGAATCCACGGAGG
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: