DreEX0013078 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57695998-57796374:-
Coord C1 exon
chr7:57796288-57796374
Coord A exon
chr7:57705399-57705500
Coord C2 exon
chr7:57695998-57696096
Length
102 bp
Sequences
Splice sites
3' ss Seq
CACTTTCTTTTTTCTTCTAGTCG
3' ss Score
8.96
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATGAATGAAGACACTCAGTCCCATCTGAGGATGGAGGCTTCAGACAAACTCAATGGGCTTGGAGGGAGGAGGAGGCGACCAAAGAAG
Seq A exon
TCGGACAGCAACACCAGTTTCCTCCGAGCAGCAAGAGCAGGCAATATTGACAAGGTTCTGGAATATCTGAAGGGTGGAGTAGACATCGGCACTAGTAATCAG
Seq C2 exon
AATGGCCTGAACGCTTTACACTTGGCAGCAAAGGAAGGACATGTGGATCTGGTCCAGGAGCTGCTGGGGAGGGGGTCTTCAGTAGATTCTGCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'0-3,'0-1,5-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.235 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGAGGATGGAGGCTTCA
R:
GGTAGCAGAATCTACTGAAGACCC
Band lengths:
162-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]