GgaEX1065924 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58420436-58575799:-
Coord C1 exon
chr4:58575741-58575799
Coord A exon
chr4:58431439-58431540
Coord C2 exon
chr4:58420436-58420534
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTATCTTTTTACAGTCT
3' ss Score
8.82
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTAAGTAACTGAATGGGACACGAAGAATTGATGTTTAAATGGCCAGCATGTTGCAAAAG
Seq A exon
TCTGACAGCAATGCAAGCTTTCTCCGAGCTGCCAGGGCTGGCAATTTGGACAAAGTAGTGGAATACCTGAAAAGCGGAATAGACATTAACACATGTAATCAG
Seq C2 exon
AATGGGCTCAATGCTCTGCACCTGGCGGCTAAAGAAGGCCATGTGGGACTGGTACAAGAATTACTGGAAAGAGGGTCGGCTGTGGATTCTGCCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'0-6,'0-4,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(28.4=79.4)
C2:
PF127962=Ank_2=FE(33.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACACGAAGAATTGATGT
R:
GCAGAATCCACAGCCGACC
Band lengths:
138-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]