RnoEX0009337 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231385574-231547750:-
Coord C1 exon
chr2:231547652-231547750
Coord A exon
chr2:231409392-231409493
Coord C2 exon
chr2:231385574-231385672
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTCTTTCTCTTACAGTCT
3' ss Score
11.85
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AACCAAAACAAGTGTGAGAATCAGACTACATGCAATGAAGCCACACAGTCAAGCTGCAGCCAACTCAAGGACCCCTACGACGTGCATCCTGGTGACCAG
Seq A exon
TCTGACAGCAATGCCAGCTTCCTCCGCGCTGCCAGAGCAGGCAACCTGGACAAAGTTGTGGAGTATCTGAAAGGAGGCATTGACATCAACACTTGCAATCAG
Seq C2 exon
AATGGACTCAACGCGCTCCATCTGGCAGCCAAGGAAGGCCACGTGGGCCTCGTGCAGGAGCTGCTGGGAAGAGGGTCCTCCGTGGATTCTGCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'2-12,'2-10,16-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.063 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAAAACAAGTGTGAGAATCAGAC
R:
GTGGCAGAATCCACGGAGG
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]