RnoEX0009354 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231409392-231648122:-
Coord C1 exon
chr2:231648102-231648122
Coord A exon
chr2:231547652-231547750
Coord C2 exon
chr2:231409392-231409493
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTAATGTAAATTCTAACAGAAC
3' ss Score
6.09
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATGACAACCATGTTGCAAAAG
Seq A exon
AACCAAAACAAGTGTGAGAATCAGACTACATGCAATGAAGCCACACAGTCAAGCTGCAGCCAACTCAAGGACCCCTACGACGTGCATCCTGGTGACCAG
Seq C2 exon
TCTGACAGCAATGCCAGCTTCCTCCGCGCTGCCAGAGCAGGCAACCTGGACAAAGTTGTGGAGTATCTGAAAGGAGGCATTGACATCAACACTTGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.636 C2=0.063
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(29.0=79.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]