RnoEX0009335 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231547652-231824457:-
Coord C1 exon
chr2:231824357-231824457
Coord A exon
chr2:231648102-231648162
Coord C2 exon
chr2:231547652-231547750
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTTCCCCTTTAGGTA
3' ss Score
13.86
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCGAGGGAAGGAATTCTGAGACCGTGGACATGGCTTCTCCCACCTCCCCTGGCCCGGAGGGAGGGGCTTGCACCCAGCAGAACCCACCGCGGATCCGTCAG
Seq A exon
GTAAGTAACTGATCAGGGACATGAAGAGCTGCTATTTCAAATGACAACCATGTTGCAAAAG
Seq C2 exon
AACCAAAACAAGTGTGAGAATCAGACTACATGCAATGAAGCCACACAGTCAAGCTGCAGCCAACTCAAGGACCCCTACGACGTGCATCCTGGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.857 C2=0.636
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCGTGGACATGGCTTCTC
R:
CAGCTTGACTGTGTGGCTTCA
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]